Teaching plant pathologists the data visualization tools to show their awesome work

Home Getting Started Course Materials Schedule About / Contact Us In-class Feedback Open Educational Resource

Data Visualization for Plant Pathologists

Programming Resources


Install Python on your own computer

  • Download page for Python
  • Download page for Numpy & Scipy
    • 64-bit installation packages for Windows can be downloaded here
    • Scipy Superpack (core scientific libraries for 64-bit Mac)
  • Download page for Biopython
  • Download page for Wing IDE (go to the bottom of the page for the free version - Wing IDE 101)

Programming in Python

  • Online Python Tutor
    • see how Python is executing your program line by line 
  • A gentle introduction to programming using Python
  • A primer on Python for life science researchers
  • Programming Course for Biologists at the Pasteur Institute
  • Python course in bioinformatics at the Pasteur Institute 
  • Google’s Python Class
  • Division operators in Python
  • Software Carpentry - This online course is a great introduction to more advanced concepts in scientific programming
  • BioPython Tutorial and Cookbook

Scientific Tools in Python

  • SciPy
  • NumPy
  • Matplotlib
  • Python based GIS tools for landscape genetics: visualising genetic relatedness and measuring landscape connectivity

Phylogenetic Tools in Python

  • Biopython’s Phylo module
  • DendroPy